Unique HBV recombinant forms identified with jpHMM
Recombinant forms that are represented by only one single sequence (or several related sequences), are called unique HBV recombinant forms, following the nomenclature for HIV. These recombinant forms are presented here. Please note that only recombinant forms that do not contain any uncertainty regions are given.Please click on an image to zoom into it.
AB241109
AB031265
D16665
EU939629
GQ377595
EU939559
EU939636
U87747
AB231909
EF494376
EF494378
FJ562309
X65258
EF103282
AF297619
AF297620
AB222708
DQ078791
EU833889
EU833890
GQ161753
GQ161767
GQ161775
GQ161806
GQ161754
AB214516
The following recombinant forms are represented by several, but not unrelated, sequences:
AF418682
AF418690
All images were created with the software package Circos (Krzywinski, M. et al., Genome Res. (2009)).
References
Please cite one of the following papers if you use this tool in your publication (a list of all references can be found here):
- A.-K. Schultz, M. Zhang, I. Bulla, T. Leitner, B. Korber, B. Morgenstern, M. Stanke. jpHMM: Improving the reliability of recombination prediction in HIV-1. Nucleic Acids Research, 37:W647-51. 2009
- M. Zhang, A.-K. Schultz, C. Calef, C. Kuiken, T. Leitner, B. Korber, B. Morgenstern, M. Stanke. jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. Nucleic Acids Research, 34:W463-5. 2006.
- A.-K. Schultz, M. Zhang, T. Leitner, C. Kuiken, B. Korber, B. Morgenstern, M. Stanke. A Jumping Profile Hidden Markov Model and Applications to Recombination Sites in HIV and HCV Genomes. BMC Bioinformatics 7:265. 2006.
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